PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g19940
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 437aa    MW: 49946.5 Da    PI: 6.3929
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g19940genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00089155178123
                 EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                 y+C+ Cg+ ++++ +Lk+H +  H
  CA02g19940 155 YVCSVCGRKCKTHLDLKKHFKQlH 178
                 9******************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10107.8E-575145IPR029060PIN domain-like
PROSITE profilePS5015711.011155183IPR007087Zinc finger, C2H2
SMARTSM003550.0078155178IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280157178IPR007087Zinc finger, C2H2
CDDcd061671.02E-10169309No hitNo description
Gene3DG3DSA:3.40.50.10107.8E-5240297IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MSSVFDSIEP LHLKVSSFLP ISLSTKHPNL HPLTLSFRTN SQIAPCKPIK WHISACAAGQ  60
EIDMERTKEG LYTAKPKKVV ILWDLDNKPP RGPPYEAAMS LKKVAQCFGE VVDMSAYANR  120
HAFIHLPRWV VEQRRERRHL DILERKGVVT PSEPYVCSVC GRKCKTHLDL KKHFKQLHER  180
EREKKLSRMR SLKGKKRQRF KERFVDGNYK YREAAKSLIT PKVGYGLASE LRRAGVYVKT  240
VADKPQAADW ALKKQIKHSM SRGIDWLFLI SDDSDFCAML RRAKEANLGT VVVGDWDGAL  300
GRHADLWVPW NGVENGEITE KDLVLKTERR KESWDRSNAR FSVSEFNGRV REEDTSLGSL  360
MDDIVEDLKS SGTRISAFSE GEEDEEFEEL DEEDWLRARL DQPGDDEYNT EDSIVSDEEE  420
GGYLLDSEDE DTGEMV*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154500.0AC215450.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0026H18, complete sequence.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560373.10.0PREDICTED: uncharacterized protein LOC107859780
TrEMBLA0A0V0HYN40.0A0A0V0HYN4_SOLCH; Putative C2H2-like zinc finger protein-like (Fragment)
STRINGPGSC0003DMT4000038440.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122681518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-157C2H2-like zinc finger protein